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Erik Bongcam Rudloff

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Presentation

My main interest is in solving Life Science problems using bioinformatics approaches. Developing and managing complex multidisciplinary networked projects.

Erik Bongcam-Rudloff on Twitter: "The B3Africa project was presented at ISBER, Toronto, Canada



Research

B3Africa: The European-African Bioibanks initiative

DEANN: a Marie Curie EU-American continent NGS Action project

H3AfricaBionet: The Pan African Bioinformatics Network

Setaria Digitata Genome Sequencing and annotation

Coral Reef Metagenomics

Background

Education and degree

  • Dr. Medical Sciences, Uppsala University, 1995
  • Docent exam, Swedish University of Agricultural Sciences, 2004

Positions

  • Professor in Bioinformatics
    Head SLU-Global Bioinformatics Centre
    Head of SLU Bioinformatics Infrastructure (SLUBI)
  • Associate Professor Department of Animal Breeding and Genetics, Bioinformatics section 2008-2016
  • Associate Professor Linnaeus Centre for Bioinformatics 2004-2008
  • Assistant professor Linnaeus Centre for Bioinformatics 2000-2004

Selected publications

1: Norling M, Bishop RP, Pelle R, Qi W, Henson S, Drábek EF, Tretina K, Odongo D, Mwaura S, Njoroge T, Bongcam-Rudloff E, Daubenberger CA, Silva JC. The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence. BMC Genomics. 2015 Sep 24;16:729. doi: 10.1186/s12864-015-1910-9.

2: Spjuth O, Bongcam-Rudloff E, Hernández GC, Forer L, Giovacchini M, Guimera RV, Kallio A, Korpelainen E, Kańduła MM, Krachunov M, Kreil DP, Kulev O, Łabaj PP,Lampa S, Pireddu L, Schönherr S, Siretskiy A, Vassilev D. Experiences with workflows for automating data-intensive bioinformatics. Biol Direct. 2015 Aug 19;10:43. doi: 10.1186/s13062-015-0071-8.

3: Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium. GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training. PLoS Comput Biol. 2015 Apr 9;11(4):e1004143. doi: 10.1371/journal.pcbi.1004143.eCollection 2015 Apr. Erratum in: PLoS Comput Biol. 2015 May;11(5):e1004281.

4: Almouzni G, Altucci L, Amati B, Ashley N, Baulcombe D, Beaujean N, Bock C,Bongcam-Rudloff E, Bousquet J, Braun S, Bressac-de Paillerets B, Bussemakers M,Clarke L, Conesa A, Estivill X, Fazeli A, Grgurević N, Gut I, Heijmans BT,Hermouet S, Houwing-Duistermaat J, Iacobucci I, Ilaš J, Kandimalla R,Krauss-Etschmann S, Lasko P, Lehmann S, Lindroth A, Majdič G, Marcotte E, Martinelli G, Martinet N, Meyer E, Miceli C, Mills K, Moreno-Villanueva M, Morvan G, Nickel D, Niesler B, Nowacki M, Nowak J, Ossowski S, Pelizzola M, Pochet R, Potočnik U, Radwanska M, Raes J, Rattray M, Robinson MD, Roelen B, Sauer S, Schinzer D, Slagboom E, Spector T, Stunnenberg HG, Tiligada E, Torres-Padilla ME, Tsonaka R, Van Soom A, Vidaković M, Widschwendter M. Relationship between genome and epigenome--challenges and requirements for future research. BMC Genomics. 2014 Jun 18;15:487. doi: 10.1186/1471-2164-15-487.

5: Gomez-Cabrero D, Abugessaisa I, Maier D, Teschendorff A, Merkenschlager M, Gisel A, Ballestar E, Bongcam-Rudloff E, Conesa A, Tegnér J. Data integration in the era of omics: current and future challenges. BMC Syst Biol. 2014;8 Suppl 2:I1. doi: 10.1186/1752-0509-8-S2-I1. Epub 2014 Mar 13. Review.

Links

www.b3africa.org
www.cost-charme.eu
www.embnet.org


Contact
Professor at the Department of Animal Breeding and Genetics; Department of Animal Breeding and Genetics, Bioinformatics
Telephone: 018-672121, 072-5355587
Postal address:
Inst för Husdjursgenetik, Box 7023
75007 UPPSALA
Visiting address: Ulls väg 26, Uppsala

Publications list: