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Ganapathi Varma Saripella

Ganapathi Varma Saripella

Presentation

I work on NGS data-sets, currently focusing on RNA-seq differential expression analysis, annotation and eQTL analysis. I have also worked on few other closely related fields such as WGS, proteomics, sequence analysis and data-mining. My basic interest is to apply these bioinformatic techniques to the complex diseases and for sustainable food production.

Part of SLUBI (www.slubi.se), PlantLink (www.plantlink.se)

Background

Bioinformatics Engineer at INSERM UMR_S 1166 at Sorbonne University, UPMC, Paris, 2014 –2017

Research Fellowship at Biomedical Centre (BMC), Uppsala University, 2013 – 2014

Thesis work at Science for Life Laboratory (SciLifeLab), Stockholm Bioinformatics Center (SBC), 2013

Software Developer at CMC Limited, Hyderabad, India, 2009 - 2010

Education:

Master's program (MSc) in Bioinformatics, Stockholm University, 2010 - 2013

Applied Bioinformatics, Omic Data and Systems Biology, KTH Royal Institute of Technology, 2011

Bachelor of Technology (B.Tech) in Bioinformatics, Sathyabama University, India, 2005 - 2009

Supervision

Actively engaged in co-mentoring of bioinformatics postgraduate student at INSERM, Paris, 2015

Selected publications

Khan W, Saripella GV, Ludwig T, Cuppens T, Thibord F; FREX consortium, Génin E, Deleuze JF, Trégouët DA; GENMED Consortium.(2018). MACARON: A python framework to identify and re-annotate multi-base affected codons in whole genome/exome sequence data. Bioinformatics, bty382. https://doi.org/10.1093/bioinformatics/bty382.

Saripella GV, Sonnhammer ELL, & Forslund K. (2016). Benchmarking the next generation of homology inference tools. Bioinformatics, 32(17), 2636–2641. http://doi.org/10.1093/bioinformatics/btw305.


Contact
Research Engineer at the Institutionen för växtförädling
Postal address:
Växtförädling, Box 101
230 53 ALNARP
Visiting address: Sundsvägen 10, Alnarp