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Juliette Hayer

Juliette Hayer
Researcher in Bioinformatics at SLU working with viral pathogens detection and discovery in animals. I am also the coordinator of the new SLU Bioinformatics Infrastructure (SLUBI).

Research

I am involved in many different projects aiming at viruses detection and discovery using viral metagenomics with hight throughput sequencing technologies.

Background

Since March 2017           Researcher and SLU Bioinformatics Infrastructure's coordinator, Swedish University of Agricultural Sciences, Department of Animal Breeding and Genetics, SLU Global Bioinformatics Centre, Uppsala, Sweden.

Sept. 2013-Aug. 2016     Post-doctoral position at Swedish University of Agricultural Sciences, Department of Animal Breeding and Genetics, SLU Global Bioinformatics Centre, Uppsala, Sweden.

    - Study of viral metagenomes and development of a dedicated analytic pipeline in the veterinary field.

2009 - 2013            PhD Student at Institut de Biologie et Chimie des protéines (UMR 5086 CNRS-UCBL), Bioinformatics Structures and Interactions group, Lyon, France.     - Doctoral contract with teaching mission at Université Claude  Bernard Lyon 1.

    - Development of HBVdb, a knowledge database for Hepatitis B Virus, for the study of drug resistance. Integration of sequence analysis tools and application to the polymerase molecular modeling.

2008 - 2009            Engineer at Laboratoire de génétique moléculaire (Inserm U827), Montpellier, France (one-year engineer contract)

    - Development of tools for input and quality control of patients’ clinical data (neuromuscular diseases)

    - Development of a management system for pre-implantatory diagnosis experiments

2006-2008       MS in Bioinformatics - Université de la Méditerranée, Marseille, France. 

2003-2006       BS in Cellular Biology - Université de la Méditerranée, Marseille, France.

 

Selected publications

  • Malmberg, M., Rubio-Guerri, C., Hayer, J., García-Párraga, D., Nieto-Pelegrín, E., Melero, M., ... & Granberg, F. (2017). Phylogenomic analysis of the complete sequence of a gastroenteritis-associated cetacean adenovirus (bottlenose dolphin adenovirus 1) reveals a high degree of genetic divergence. Infection, Genetics and Evolution, 53, 47-55.

  • Cholleti, H., Hayer, J., Abilio, A. P., Mulandane, F. C., Verner-Carlsson, J., Falk, K. I., ... & Blomström, A. L. (2016). Discovery of novel viruses in mosquitoes from the Zambezi valley of Mozambique. PloS one, 11(9), e0162751.

  • Norling, M., Karlsson-Lindsjö, O. E., Gourlé, H., Bongcam-Rudloff, E., & Hayer, J. (2016). MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies. PloS one, 11(8), e0160334.

  • Philipp Engel, Waldan Kwong, Quinn McFrederick, Kirk E. Anderson, Seth Barribeau, James Angus Chandler, Scott Cornman Cornman, Jacques Dainat, Joachim de Miranda, Vincent Doublet, Olivier Emery, Jay Evans, Laurent Farinelli, Michelle Flenniken, Fredrik Granberg, Juris Grasis, Laurent Gauthier, Juliette Hayer, Hauke Koch, Sarah Kocher, Vincent Martinson, Nancy Moran, Monica Munoz-Torres, Irene Newton, Robert Paxton, Jenkyn Powell, Ben Sadd, Paul Schmid‐Hempel, Regula Schmid‐Hempel, Se Jin Song, Ryan Schwarz, Dennis vanEngelsdorp, and Benjamin Dainat. (2016). The bee microbiome: impact on bee health and model for evolution and ecology of host-microbe interactions". mBio vol. 7 no. 2 e02164-15.
  • Karlsson O.E.*, Larsson J.*, Hayer J., Berg M. & Jacobson M. (2016) The intestinal eukaryotic virome in healthy and diarrhoeic neonatal piglets. PLoS ONE, 11(3): e0151481.

 

  • Hayer J., Rodriguez C., Germanidis G., Deléage G., Zoulim F., Pawlotsky J. M., & Combet C. (2014). Ultradeep Pyrosequencing and Molecular Modeling Identify Key Structural Features of Hepatitis B Virus RNase H, a Putative Target for Antiviral Intervention. Journal of Virology, 88(1), 574-582.
  • Hayer J., Jadeau F., Deléage G., Kay A., Zoulim F., & Combet C. (2013). HBVdb: a knowledge database for Hepatitis B Virus. Nucleic Acids Research, 41(D1), D566-D570.

Contact
Researcher at the Department of Animal Breeding and Genetics; Department of Animal Breeding and Genetics, Bioinformatics
Telephone: 018-671955
Postal address:
Inst för Husdjursgenetik, Box 7023
75007 UPPSALA
Visiting address: Ulls väg 26, Uppsala

Publications list: