Publications

Publications

32. Pucholt, P., Sjödin, P., Weih, M., Rönnberg-Wästljung, A-C, and Berlin, S. (2015). Genome-wide transcriptional and physiological responses to drought stress in leaves and roots of two willow genotypes. BMC Plant Biology 15:244.

31. Fogelqvist, J., Verkhozina, A. V., Katyshev, A. I., Pucholt, P., Dixelius, C., Rönnberg-Wästljung, A-C., Lascoux, M. and Berlin, S. (2015). Genetic and morphological evidence for introgression between three species of willows. BMC Evolutionary Biology 15:193.

30. Höglund, S., Rönnberg-Wästljung, A-C., Berlin, S. Larsson, S. (2015). Willow resistance to a galling insect is driven by a lack of induced susceptability not an induced defense. Arthropod-Plant Interactions 9:447-455.

29. Hallingbäck, H. R. Fogelqvist, J., Powers, S.J. Turrion-Gomez, J., Rossiter, R., Amey, J., Martin, T., Weih, M., Gyllenstrand, N. Karp, A., Lagercrantz, U. Hanley, S. J., Berlin S. and Rönnberg-Wästljung, A-C. (2015). Association mapping in Salix viminalis L. (Salicaceae)–identification of candidate genes associated with growth and phenology. GCB Bioenergy (early view).

28. Beuch, U., Berlin, S., Åkerblom, J., Nicolaisen, M., Nielsen, S. L. Crosslin, J. M., Hamm, P. B., Santala, J., Valkonen, J. and Kvarnheden, A. (2015). Diversity and evolution of Potato mop-top virus. Archives of Virology 160:1345-1351.

27. Pucholt, P.^*, Rönnberg-Wästljung. A-C.^*, Berlin, S. (2015). Single locus sex determination and female heterogamety in the basket willow (Salix viminalis L.). Heredity 114:575-583. (^*Equal contribution).

26. Berlin, S., Trybush, S. T., Fogelqvist, J., Gyllenstrand, N., Hallingbäck, H., Åhman, I., Nordh, N-E., Larsson S., Shield, I., Powers, S., Weih, M., Lagercrantz, U., Rönnberg-Wästljung, A-C., Karp, A and Hanley, S. J. (2014). Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae). Tree Genetics & Genomes 10:1595-1610.

25. Berlin, S.^*, Ghelardini, L.^*, Bonosi, L., Weih, M. and Rönnberg-Wästljung, A-C. (2014). QTL mapping of biomass and nitrogen economy traits in willows (Salix spp.) grown under contrasting water and nutrient conditions. Molecular Breeding 34:1987-2003. (^*Equal contribution)

24. Ghelardini, L. Berlin, S. Weih, M. Lagercrantz, U. Gyllenstrand, N. Rönnberg-Wästljung, A. C. (2014). Genetic architecture of spring and autumn phenology in Salix. BMC Plant Biology 14:31.

23. Moghadam, H. K., Pointer, M. A., Wright, A. E., Berlin, S., and Mank, J. E. (2012). W chromosome expression responds to female-specific selection. Proceedings of the National Academy of Sciences, USA 109:8207-8211.

22. Berlin, S., Fogelqvist, J.,  Lascoux, M.,  Lagercrantz, U. and Rönnberg-Wästljung, A-C. (2011). Polymorphism and divergence in two willow species, Salix viminalis L and Salix schwerinii E Wolf. G3: Genes, Genomes, Genetics 1:387-400.

21. Berlin Kolm, S., Björkman, C., Bonosi, L., Ghelardini, L., Lehrman, A., Nordh, N-E., Rönnberg-Wästljung, A-C., Samils, B., Stenberg, J., Stenlid, J., Weih, M., Åhman, I. och von Arnold, S. (2011). Nya salixsorter med modern växtförädlingsteknik. Fakta Jordbruk - Rön från Sveriges Lantbruksuniversitet, Nr 1.

20. Quintela, M., Berlin, S., Wang, B. and Höglund, J. (2010). Genetic diversity and differentiation among Lagopus lagopus populations in Scandinavia and Scotland: evolutionary significant units confirmed by SNP markers. Molecular Ecology 19:2380-2393.

18. Berlin, S., Lagercrantz, U., von Arnold S., Öst, T. and Rönnberg-Wästljung, A-C. (2010). High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus. BMC Genomics 11:129.

17. Mank, J., Vicoso, B., Berlin, S. and Charlesworth, B. (2010). Effective population size and the faster-X effect: empirical results and their interpretation. Evolution 64:663-674.

16. Berlin, S., Quintela, M., Höglund, J. (2008). A multilocus assay reveals high nucleotide diversity and limited differentiation among Scandinavian Willow grouse (Lagopus lagopus). BMC Genetics 9:89.

16. Berlin, S., Qu, L. and Ellegren, H. (2008). Adaptive evolution of gamete recognition proteins in birds. Journal of Molecular Evolution 67:488-496.

15. Berlin, S., Qu, L., Li, X., Yang, N. and Ellegren, H. (2008). Positive diversifying selection in avian Mx genes. Immunogenetics 60:689-697.

14. Temperley, N. D., Berlin, S., Paton, B. I. R., Griffin, D. K. and Burt, D. W. (2008). Evolution of the chicken Toll-like receptor gene family: a story of gene gain and gene loss. BMC Genomics 9:62

13. Berlin, S., Tomaras, D. and Charlesworth, B. (2007). Low mitochondrial variability in birds may indicate Hill-Robertson effects on the W chromosome. Heredity 99:389-396.

12. Berlin, S., Brandström, M., Backström, N., Axelsson, E., Smith, N. G. and Ellegren, H. (2006). Substitution rate heterogeneity and the male mutation bias. Journal of Molecular Evolution 62:226-33.

11. Berlin, S. and Ellegren, H. (2006) Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds. Journal of Molecular Evolution 62:66-72.

10. Backström, N., Ceplitis, H., Berlin, S. and Ellegren, H. (2005). Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome. Molecular Biology and Evolution 22:1992-1999.

9. Berlin, S. and Smith, N. G. (2005). Testing for adaptive evolution of the female reproductive protein ZPC in mammals, birds and fishes reveals problems with the M7-M8 likelihood ratio test. BMC Evolutionary Biology 5:65.

8. Axelsson, E., Smith, N.G., Sundström, H., Berlin, S., Ellegren, H. (2004). Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey. Molecular Biology and Evolution 21:1538-1547.

7. International Chicken Genome Sequencing Consortium. (2004). Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432:695-716.

6. Berlin S, Ellegren H. (2004). Chicken W: a genetically uniform chromosome in a highly variable genome. Proceedings of the National Academy of Sciences USA 101:15967-15969.

5. Berlin, S., Smith, N.G.C. and Ellegren H. (2004). Do avian mitochondria recombine? Journal of Molecular Evolution 58:163-167.

4. Bartosch-Härlid, A.^*, Berlin, S.^*, Smith N.G.C., Møller A. P. and Ellegren H. (2003). Life history and the male mutation bias. Evolution 57:2398-2406. (^*Equal contribution)

3. Hipkiss, T., Hörnfeldt, B., Eklund, U. and Berlin S. (2002). Year-dependent sex-biased mortality in supplementary-fed Tengmalm's owl nestlings. Journal of Animal Ecology 71:693-699.

2. Berlin, S. and Ellegren, H. (2001). Clonal inheritance of avian mitochondrial DNA. Nature 413: 37-38.

1. Berlin, S., Merila, J. and Ellegren, H. (2000). Isolation and characterization of polymorphic microsatellite loci in the common frog, Rana temporaria. Molecular Ecology 9: 1938-1939.