Abu Bakar Siddique

Abu is the bioinformatician at SLUBI, an infrastructure that provides support and training in bioinformatics for researchers at SLU

Background

• Since June 2023: Bioinformatician of SLU Bioinformatics Infrastructure, Swedish University of Agricultural Sciences, Department of Plant Biology, NJ, Ultuna, Uppsala, Sweden
• 2022–2023: Forskningsingenjör of SLU Bioinformatics Infrastructure, Swedish University of Agricultural Sciences, Department of Plant Biology, NJ, Ultuna, Uppsala, Sweden
• 2020–2021: Post-doc research fellow (Forskare), Department of Ecology and Environmental Sciences, Umeå University, Umeå, Sweden
• 2018–2019: Mobility Post-doc research fellow (Forskare), Dept of Virology, Institute Of Plant Molecular Biology, Biology Centre CAS, Ceske Budejovice, Czech Republic
• 2013–2017: PhD-student (Doktorand), Institute of Botany and Landscape Ecology, Ernst-Moritz-Arndt Universität (Greifswald University), Greifswald, Germany
• 2012–2013: Research assistant (Forskningsassistent), Department of Plant Physiology, UPSC, Umeå University, Sweden

Metabarcoding
Metagenomics
Metatranscriptomics
Mycobiome
Environmental DNA (eDNA)

• Analysis of High-Throughput Sequencing RNA-Seq Data (PhD course)
• Genome-wide predictions in breeding: genotype-phenotype associations and genomic selection (PhD course)
• Data handling and high-quality illustrations for publications (PhD course)
• Multi-omics analyses of the microbial community (PhD course)

• Md Jonaid Hossain (intern, mentor, 2022)
• Khan R Salehin (intern, co-supervisor, 2021)
• Abu Bakar Siddique (master’s thesis, co-supervisor, 2021)
• Anis Mahmud Khokon (master’s thesis, co-supervisor, 2016)