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Ganapathi Varma Saripella

Ganapathi Varma Saripella

Presentation

My work involves analysing High Throughput Sequencing datasets and providing bioinformatics services. Focus areas such as Transcriptomics (RNA-seq), Whole-genomics (WGS), whole-exome sequencing (WES), SNP calling, annotation, eQTL analysis, sequence analysis, High dimensional data analysis, data-mining and cluster analysis along with other statistical methods.

Part of SLUBI (SLUBI)

Selected publications

1. Hammenhag, C.; Saripella, G.V.; Ortiz, R.; Geleta, M. QTL Mapping for Domestication-Related Characteristics in Field Cress (Lepidium campestre)—A Novel Oil Crop for the Subarctic Region. Genes 2020, 11, 1223. link. Poster.

2. Vetukuri, R.R., Kalyandurg, P.B., Saripella, G.V. et al. Effect of RNA silencing suppression activity of chrysanthemum virus B p12 protein on small RNA species. Arch Virol (2020). link.

3. Juma I., Geleta M., Nyomora A., Saripella GV., Hovmalm HP., Carlsson AS., Fatih M., Ortiz R. Genetic diversity of avocado from the southern highlands of Tanzania as revealed by microsatellite markers. Hereditas 157, 40 (2020). link.

4. Odilbekov F, Armoniené R, Koc A, Svensson J and Chawade A (2019) GWAS-Assisted Genomic Prediction to Predict Resistance to Septoria Tritici Blotch in Nordic Winter Wheat at Seedling Stage. Front. Genet. 10:1224. doi: 10.3389/fgene.2019.01224. (Bioinformatics support). link.

5. Odilbekov, F., He, X., Armoniené, R., Saripella, G.V., Henriksson, T., Singh, P.K., Chawade, A. QTL Mapping and Transcriptome Analysis to Identify Differentially Expressed Genes Induced by Septoria Tritici Blotch Disease of Wheat. Agronomy 2019, 9, 510. link.

6. Khan W, Saripella GV, Ludwig T, Cuppens T, Thibord F; FREX consortium, Génin E, Deleuze JF, Trégouët DA; GENMED Consortium. (2018). MACARON: A python framework to identify and re-annotate multi-base affected codons in whole genome/exome sequence data. Bioinformatics Oxford journal, bty382. link.

7. Saripella, G. V., Sonnhammer, E. L. L., & Forslund, K. (2016). Benchmarking the next generation of homology inference tools. Bioinformatics Oxford journal, 32(17), 2636–2641. link.


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