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VM0130

Clinical genomics in veterinary medicine

In this course you will learn about how changes in DNA can lead to disease in domestic animals. You will also learn about current methods to analyse DNA. The course is given as an online course.

Information from the course leader

Alla moment på kursen kommer att ges på distans, dvs kursen innehåller inga obligatoriska träffar på Campus Ultuna, SLU.

All parts of the course will be given remotely, i.e. the course does not include mandatory meetings at Campus Ultuna, SLU.

Course evaluation

The course evaluation is now closed

VM0130-30021 - Course evaluation report

Once the evaluation is closed, the course coordinator and student representative have 1 month to draft their comments. The comments will be published in the evaluation report.

Additional course evaluations for VM0130

Academic year 2021/2022

Clinical genomics in veterinary medicine (VM0130-30268)

2022-01-17 - 2022-03-23

Syllabus and other information

Litterature list

Course literature

VM0130 Clinical genomics in veterinary medicine, 7.5 Credits Spring semester 2024

L1: Genome structure and function

Lamichhaney S, Fan G, Widemo F, Gunnarsson U, Thalmann DS, Hoeppner MP, Kerje S, Gustafson U, Shi C, Zhang H, Chen W, Liang X, Huang L, Wang J, Liang E, Wu Q, Lee SM, Xu X, Höglund J, Liu X, Andersson L. Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax). Nat Genet. 2016 Jan;48(1):84-8. doi: 10.1038/ng.3430. Epub 2015 Nov 16.

L2: Transcriptome and transcriptional regulation

Tengvall K, Bergvall K, Olsson M, Ardesjö-Lundgren B, Farias F. H. G, Kierczak M, Hedhammar
Å, Lindblad-Toh K, Andersson G. Transcriptomes from German shepherd dogs reveal differences in immune activity between atopic dermatitis affected and control skin. Immunogenetics 72(5): 315- 323 (2020). doi: 10.1007/s00251-020-01169-3.

L3: Genetic diversity and polymorphism

Fages A, Hanghøj K, Khan N, Gaunitz C et al. Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series. Cell. 2019 May 30;177(6):1419-1435.e31. doi: 10.1016/j.cell.2019.03.049. Epub 2019 May 2.

L4: Genome mapping of disease and defects

T Raudsepp, C J Finno, R R Bellone, J L Petersen. Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post-genome era. Review in Anim Genet. 2019 Dec;50(6):569-597. doi: 10.1111/age.12857. Epub 2019 Sep 30.

1

L5: A translocation associated with gonadal hypoplasia in cattle

Heli Venhoranta, Hubert Pausch, Michal Wysocki, Izabela Szczerbal, Reetta Hänninen, Juhani Taponen, Pekka Uimari, Krzysztof Flisikowski, Hannes Lohi, Ruedi Fries, Marek Switonski, Magnus Andersson. Ectopic KIT copy number variation underlies impaired migration of primordial germ cells associated with gonadal hypoplasia in cattle (Bos taurus). PLoS One. 2013 Sep 26;8(9):e75659.

doi: 10.1371/journal.pone.0075659. eCollection 2013.

L6: Epigenetics in disease

Feinberg AP & Levchenko A. Epigenetics as a mediator of plasticity in cancer. Science 379: 2023 Feb 10;379(6632):eaaw3835. doi: 10.1126/science.aaw3835.

L7: Clinical sequencing

Krier JB, Kalia SS, Green RC. Dialogues Clin Neurosci. Genomic sequencing in clinical practice: applications, challenges, and opportunities. 2016 Sep;18(3):299-312. doi: 10.31887/DCNS.2016.18.3/jkrier.

L8: Molecular genetic diagnostics

Ackerman L. The Future of Small Animal Veterinary Practice. Vet Clin North Am Small Anim Pract. 2023 Nov 11:S0195-5616(23)00154-7. doi: 10.1016/j.cvsm.2023.10.005.

L9: Cytogenetics

Izabela Szczerbal and Marek Switonski. Chromosome Abnormalities in Domestic Animals as Causes of Disorders of Sex Development or Impaired Fertility. Open access peer-reviewed book chapter, INTECH. Chapter 9, 2016. http://dx.doi.org/10.5772/62053.

Course facts

The course is offered as an independent course: Yes Tuition fee: Tuition fee only for non-EU/EEA/Switzerland citizens: 24400 SEK Cycle: Bachelor’s level (G2F)
Subject: Veterinary Medicine Veterinary Medicine
Course code: VM0130 Application code: SLU-30021 Location: Uppsala Distance course: Yes Language: English Responsible department: Department of Animal Breeding and Genetics Pace: 50%