Resources
Last changed: 14 December 2021
New: EpigenomeBrowser
AGRONOMICS1 tiling arrays for Arabidopsis thaliana
PlantDB
PlantDB is a Microsoft (R) Office Access database with a user-friendly front-end for managing information relevant for experimental plants.
PlantDB can hold information about plants of different species, cultivars or genetic composition.
PlantDB1.zip (single user only)
PlantDB201.zip (multiple users)
Exner, V., Hirsch-Hoffmann, M., Gruissem, W., Hennig, L. (2008) PlantDB – a versatile database for managing plant research. Plant Meth 4, 1 (Link)
WinGene / WinPep
WinGene / WinPep are Win95/Win98/WinXP applications for analysis of nucleotide and aminoacid sequences. Note: Maintenance of these programs is discontinued and updates for new versions of Windows are not available.
Hennig, L. (1999) WinGene/WinPep: User-friendly software for the analysis of aminoacid sequences. BioTechniques 26, 1170-1172 (MEDLINE)
EVE
EVE - External Variance Estimation - is an algorithm to detect differentially expressed genes using Affymetrix ATH1 GeneChip® microarrays.
R script: eve.zip
Wille, A., Gruissem, W., Bühlmann, P., Hennig, L. (2007) EVE – External Variance Estimation increases statistical power for detecting differentially expressed genes. Plant J 52, 561-569 (MEDLINE)