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PFS0161
RNA-seq data analysis
The course contains three intense days of lectures and computer exercises. It is initiated with an introduction to Linux and working on UPPMAX. In the following, lectures from experts in RNA-seq and biostatistics will cover a range of cutting-edge issues in RNA quality control, transcript assembly, differential expression analysis and downstream analysis. An extensive set of computer exercises will familiarize you with concepts and programs for mapping, quality control of your RNA-seq data, and differential expression analysis.
Topics that will be covered include:
- Introduction to Linux and UPPMAX
- Introduction RNA seq
- RNA seq read mapping programs
- Quality assessment of RNA-seq data
- Differential expression analysis.
Topics that will be covered include:
- Introduction to Linux and UPPMAX
- Introduction RNA seq
- RNA seq read mapping programs
- Quality assessment of RNA-seq data
- Differential expression analysis.